FastQCFastQC Report
Fri 27 Sep 2019
HFJGYBGXC_n01_Col0-2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFJGYBGXC_n01_Col0-2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4243
Sequences flagged as poor quality0
Sequence length13
%GC91

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGG363585.67051614423757No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)