[2024-07-09 18:00:35,778] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-07-09 18:00:35,778] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-07-09 18:00:35,779] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-07-09 18:00:35,782] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-07-09 18:00:35,782] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-07-09 18:00:35,782] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-07-09 18:00:35,831] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-07-09 18:00:35,831] multiqc [INFO ] This is MultiQC v1.9 [2024-07-09 18:00:35,832] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-07-09 18:00:35,832] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/f5/3588ccfaa1f2c617e47f50be9cf894/merged [2024-07-09 18:00:35,832] multiqc [INFO ] Template : default [2024-07-09 18:00:35,832] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-07-09 18:00:35,832] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/f5/3588ccfaa1f2c617e47f50be9cf894/merged [2024-07-09 18:00:35,832] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-07-09 18:00:35,832] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-48319728/tmpm0imobuw [2024-07-09 18:00:35,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3258_0_3_fastqc.html [2024-07-09 18:00:35,985] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3258_0_3_fastqc.html [2024-07-09 18:00:36,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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[2024-07-09 18:00:46,868] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3297_3_fastqc.html [2024-07-09 18:00:46,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3298_3_fastqc.html [2024-07-09 18:00:46,958] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3298_3_fastqc.html [2024-07-09 18:00:47,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3299_3_fastqc.html [2024-07-09 18:00:47,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3299_3_fastqc.html [2024-07-09 18:00:47,143] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3300_1_3_fastqc.html [2024-07-09 18:00:47,157] multiqc 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HFHGFDRX5_n02_3410_3_fastqc.html [2024-07-09 18:00:48,081] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3411_3_fastqc.html [2024-07-09 18:00:48,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3411_3_fastqc.html [2024-07-09 18:00:48,178] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3412_3_fastqc.html [2024-07-09 18:00:48,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3412_3_fastqc.html [2024-07-09 18:00:48,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3413_3_fastqc.html [2024-07-09 18:00:48,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3413_3_fastqc.html [2024-07-09 18:00:48,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3414_3_fastqc.html [2024-07-09 18:00:48,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3414_3_fastqc.html [2024-07-09 18:00:48,440] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3415_3_fastqc.html [2024-07-09 18:00:48,447] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3415_3_fastqc.html [2024-07-09 18:00:48,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3416_3_fastqc.html [2024-07-09 18:00:48,530] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3416_3_fastqc.html [2024-07-09 18:00:48,605] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3417_3_fastqc.html [2024-07-09 18:00:48,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3417_3_fastqc.html [2024-07-09 18:00:48,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3418_3_fastqc.html [2024-07-09 18:00:48,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3418_3_fastqc.html [2024-07-09 18:00:48,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3419_3_fastqc.html [2024-07-09 18:00:48,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3419_3_fastqc.html [2024-07-09 18:00:48,882] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3420_3_fastqc.html [2024-07-09 18:00:48,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3420_3_fastqc.html [2024-07-09 18:00:48,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3421_3_fastqc.html [2024-07-09 18:00:48,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3421_3_fastqc.html [2024-07-09 18:00:49,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3422_3_fastqc.html [2024-07-09 18:00:49,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3422_3_fastqc.html [2024-07-09 18:00:49,168] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3423_3_fastqc.html [2024-07-09 18:00:49,175] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3423_3_fastqc.html [2024-07-09 18:00:49,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3424_3_fastqc.html [2024-07-09 18:00:49,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3424_3_fastqc.html [2024-07-09 18:00:49,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3425_3_fastqc.html [2024-07-09 18:00:49,338] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3425_3_fastqc.html [2024-07-09 18:00:49,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3426_3_fastqc.html [2024-07-09 18:00:49,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3426_3_fastqc.html [2024-07-09 18:00:49,500] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3427_3_fastqc.html [2024-07-09 18:00:49,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3427_3_fastqc.html [2024-07-09 18:00:49,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3428_3_fastqc.html [2024-07-09 18:00:49,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3428_3_fastqc.html [2024-07-09 18:00:49,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3429_3_fastqc.html [2024-07-09 18:00:49,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3429_3_fastqc.html [2024-07-09 18:00:49,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3430_3_fastqc.html [2024-07-09 18:00:49,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3430_3_fastqc.html [2024-07-09 18:00:49,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3431_3_fastqc.html [2024-07-09 18:00:49,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3431_3_fastqc.html [2024-07-09 18:00:50,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3432_3_fastqc.html [2024-07-09 18:00:50,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3432_3_fastqc.html [2024-07-09 18:00:50,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3433_3_fastqc.html [2024-07-09 18:00:50,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3433_3_fastqc.html [2024-07-09 18:00:50,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3434_3_fastqc.html [2024-07-09 18:00:50,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3434_3_fastqc.html [2024-07-09 18:00:50,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3435_3_fastqc.html [2024-07-09 18:00:50,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3435_3_fastqc.html [2024-07-09 18:00:50,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3436_3_fastqc.html [2024-07-09 18:00:50,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3436_3_fastqc.html [2024-07-09 18:00:50,596] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3437_3_fastqc.html [2024-07-09 18:00:50,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3437_3_fastqc.html [2024-07-09 18:00:50,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3438_3_fastqc.html [2024-07-09 18:00:50,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3438_3_fastqc.html [2024-07-09 18:00:50,755] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3439_3_fastqc.html [2024-07-09 18:00:50,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3439_3_fastqc.html [2024-07-09 18:00:50,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3440_3_fastqc.html [2024-07-09 18:00:50,854] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3440_3_fastqc.html [2024-07-09 18:00:50,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3441_3_fastqc.html [2024-07-09 18:00:50,943] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3441_3_fastqc.html [2024-07-09 18:00:51,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3442_3_fastqc.html [2024-07-09 18:00:51,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3442_3_fastqc.html [2024-07-09 18:00:51,098] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3443_3_fastqc.html [2024-07-09 18:00:51,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3443_3_fastqc.html [2024-07-09 18:00:51,178] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3444_3_fastqc.html [2024-07-09 18:00:51,186] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3444_3_fastqc.html [2024-07-09 18:00:51,261] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3445_3_fastqc.html [2024-07-09 18:00:51,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3445_3_fastqc.html [2024-07-09 18:00:51,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3446_3_fastqc.html [2024-07-09 18:00:51,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3446_3_fastqc.html [2024-07-09 18:00:51,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3447_3_fastqc.html [2024-07-09 18:00:51,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3447_3_fastqc.html [2024-07-09 18:00:51,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3448_3_fastqc.html [2024-07-09 18:00:51,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3448_3_fastqc.html [2024-07-09 18:00:51,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3449_3_fastqc.html [2024-07-09 18:00:51,641] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3449_3_fastqc.html [2024-07-09 18:00:51,718] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3450_3_fastqc.html [2024-07-09 18:00:51,727] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3450_3_fastqc.html [2024-07-09 18:00:51,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3451_3_fastqc.html [2024-07-09 18:00:51,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3451_3_fastqc.html [2024-07-09 18:00:51,882] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3452_3_fastqc.html [2024-07-09 18:00:51,889] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3452_3_fastqc.html [2024-07-09 18:00:51,966] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3453_3_fastqc.html [2024-07-09 18:00:51,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3453_3_fastqc.html [2024-07-09 18:00:52,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3454_3_fastqc.html [2024-07-09 18:00:52,062] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3454_3_fastqc.html [2024-07-09 18:00:52,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3455_3_fastqc.html [2024-07-09 18:00:52,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3455_3_fastqc.html [2024-07-09 18:00:52,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3456_3_fastqc.html [2024-07-09 18:00:52,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3456_3_fastqc.html [2024-07-09 18:00:52,311] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3457_3_fastqc.html [2024-07-09 18:00:52,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3457_3_fastqc.html [2024-07-09 18:00:52,398] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3458_3_fastqc.html [2024-07-09 18:00:52,407] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3458_3_fastqc.html [2024-07-09 18:00:52,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3459_3_fastqc.html [2024-07-09 18:00:52,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3459_3_fastqc.html [2024-07-09 18:00:52,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_YTW257_3_fastqc.html [2024-07-09 18:00:52,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_YTW257_3_fastqc.html [2024-07-09 18:00:52,643] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_YTW268_3_fastqc.html [2024-07-09 18:00:52,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_YTW268_3_fastqc.html [2024-07-09 18:00:52,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_YTW272_3_fastqc.html [2024-07-09 18:00:52,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_YTW272_3_fastqc.html [2024-07-09 18:00:52,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_YTW274_3_fastqc.html [2024-07-09 18:00:52,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_YTW274_3_fastqc.html [2024-07-09 18:00:52,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_undetermined_fastqc.html [2024-07-09 18:00:52,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_undetermined_fastqc.html [2024-07-09 18:00:53,523] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-07-09 18:00:53,525] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-07-09 18:00:53,592] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 93 samples (table) [2024-07-09 18:00:53,594] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-07-09 18:00:53,604] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-07-09 18:00:53,609] multiqc [DEBUG ] No samples found: conpair [2024-07-09 18:00:53,614] multiqc [DEBUG ] No samples found: peddy [2024-07-09 18:00:53,619] multiqc [DEBUG ] No samples found: somalier [2024-07-09 18:00:53,624] multiqc [DEBUG ] No samples found: methylQA [2024-07-09 18:00:53,632] multiqc [DEBUG ] No samples found: mosdepth [2024-07-09 18:00:53,636] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-07-09 18:00:53,639] multiqc [DEBUG ] No samples found: qualimap [2024-07-09 18:00:53,644] multiqc [DEBUG ] No samples found: preseq [2024-07-09 18:00:53,649] multiqc [DEBUG ] No samples found: quast [2024-07-09 18:00:53,653] multiqc [DEBUG ] No samples found: qorts [2024-07-09 18:00:53,658] multiqc [DEBUG ] No samples found: rna_seqc [2024-07-09 18:00:53,663] multiqc [DEBUG ] No samples found: rockhopper [2024-07-09 18:00:53,667] multiqc [DEBUG ] No samples found: rsem [2024-07-09 18:00:53,679] multiqc [DEBUG ] No samples found: rseqc [2024-07-09 18:00:53,683] multiqc [DEBUG ] No samples found: busco [2024-07-09 18:00:53,688] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-07-09 18:00:53,693] multiqc [DEBUG ] No samples found: disambiguate [2024-07-09 18:00:53,697] multiqc [DEBUG ] No samples found: supernova [2024-07-09 18:00:53,710] multiqc [DEBUG ] No samples found: deeptools [2024-07-09 18:00:53,714] multiqc [DEBUG ] No samples found: sargasso [2024-07-09 18:00:53,719] multiqc [DEBUG ] No samples found: verifybamid [2024-07-09 18:00:53,724] multiqc [DEBUG ] No samples found: mirtrace [2024-07-09 18:00:53,728] multiqc [DEBUG ] No samples found: happy [2024-07-09 18:00:53,733] multiqc [DEBUG ] No samples found: mirtop [2024-07-09 18:00:53,739] multiqc [DEBUG ] No samples found: homer [2024-07-09 18:00:53,744] multiqc [DEBUG ] No samples found: macs2 [2024-07-09 18:00:53,748] multiqc [DEBUG ] No samples found: theta2 [2024-07-09 18:00:53,753] multiqc [DEBUG ] No samples found: snpeff [2024-07-09 18:00:53,762] multiqc [DEBUG ] No samples found: gatk [2024-07-09 18:00:53,767] multiqc [DEBUG ] No samples found: htseq [2024-07-09 18:00:53,772] multiqc [DEBUG ] No samples found: bcftools [2024-07-09 18:00:53,777] multiqc [DEBUG ] No samples found: featureCounts [2024-07-09 18:00:53,783] multiqc [DEBUG ] No samples found: fgbio [2024-07-09 18:00:53,795] multiqc [DEBUG ] No samples found: dragen [2024-07-09 18:00:53,800] multiqc [DEBUG ] No samples found: dedup [2024-07-09 18:00:53,805] multiqc [DEBUG ] No samples found: damageprofiler [2024-07-09 18:00:53,827] multiqc [DEBUG ] No samples found: biobambam2 [2024-07-09 18:00:53,831] multiqc [DEBUG ] No samples found: mtnucratio [2024-07-09 18:00:53,834] multiqc [DEBUG ] No samples found: picard [2024-07-09 18:00:53,838] multiqc [DEBUG ] No samples found: prokka [2024-07-09 18:00:53,843] multiqc [DEBUG ] No samples found: samblaster [2024-07-09 18:00:53,851] multiqc [DEBUG ] No samples found: samtools [2024-07-09 18:00:53,856] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-07-09 18:00:53,861] multiqc [DEBUG ] No samples found: bamtools [2024-07-09 18:00:53,865] multiqc [DEBUG ] No samples found: jellyfish [2024-07-09 18:00:53,872] multiqc [DEBUG ] No samples found: vcftools [2024-07-09 18:00:53,877] multiqc [DEBUG ] No samples found: longranger [2024-07-09 18:00:53,882] multiqc [DEBUG ] No samples found: stacks [2024-07-09 18:00:53,886] multiqc [DEBUG ] No samples found: varscan2 [2024-07-09 18:00:53,900] multiqc [DEBUG ] No samples found: bbmap [2024-07-09 18:00:53,905] multiqc [DEBUG ] No samples found: bismark [2024-07-09 18:00:53,909] multiqc [DEBUG ] No samples found: biscuit [2024-07-09 18:00:53,914] multiqc [DEBUG ] No samples found: hicexplorer [2024-07-09 18:00:53,919] multiqc [DEBUG ] No samples found: hicup [2024-07-09 18:00:53,924] multiqc [DEBUG ] No samples found: hicpro [2024-07-09 18:00:53,929] multiqc [DEBUG ] No samples found: salmon [2024-07-09 18:00:53,933] multiqc [DEBUG ] No samples found: kallisto [2024-07-09 18:00:53,938] multiqc [DEBUG ] No samples found: slamdunk [2024-07-09 18:00:53,943] multiqc [DEBUG ] No samples found: star [2024-07-09 18:00:53,947] multiqc [DEBUG ] No samples found: hisat2 [2024-07-09 18:00:53,952] multiqc [DEBUG ] No samples found: tophat [2024-07-09 18:00:53,957] multiqc [DEBUG ] No samples found: bowtie2 [2024-07-09 18:00:53,961] multiqc [DEBUG ] No samples found: bowtie1 [2024-07-09 18:00:53,966] multiqc [DEBUG ] No samples found: snpsplit [2024-07-09 18:00:53,970] multiqc [DEBUG ] No samples found: kat [2024-07-09 18:00:53,975] multiqc [DEBUG ] No samples found: leehom [2024-07-09 18:00:53,980] multiqc [DEBUG ] No samples found: adapterRemoval [2024-07-09 18:00:53,984] multiqc [DEBUG ] No samples found: clipandmerge [2024-07-09 18:00:53,989] multiqc [DEBUG ] No samples found: cutadapt [2024-07-09 18:00:53,993] multiqc [DEBUG ] No samples found: flexbar [2024-07-09 18:00:53,998] multiqc [DEBUG ] No samples found: kaiju [2024-07-09 18:00:54,003] multiqc [DEBUG ] No samples found: kraken [2024-07-09 18:00:54,007] multiqc [DEBUG ] No samples found: malt [2024-07-09 18:00:54,012] multiqc [DEBUG ] No samples found: trimmomatic [2024-07-09 18:00:54,017] multiqc [DEBUG ] No samples found: sickle [2024-07-09 18:00:54,021] multiqc [DEBUG ] No samples found: skewer [2024-07-09 18:00:54,026] multiqc [DEBUG ] No samples found: sortmerna [2024-07-09 18:00:54,030] multiqc [DEBUG ] No samples found: biobloomtools [2024-07-09 18:00:54,035] multiqc [DEBUG ] No samples found: fastq_screen [2024-07-09 18:00:54,039] multiqc [DEBUG ] No samples found: afterqc [2024-07-09 18:00:54,044] multiqc [DEBUG ] No samples found: fastp [2024-07-09 18:00:59,320] multiqc.modules.fastqc.fastqc [INFO ] Found 186 reports [2024-07-09 18:01:18,375] multiqc [DEBUG ] No samples found: pycoqc [2024-07-09 18:01:18,380] multiqc [DEBUG ] No samples found: minionqc [2024-07-09 18:01:18,385] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-07-09 18:01:18,389] multiqc [DEBUG ] No samples found: clusterflow [2024-07-09 18:01:18,394] multiqc [DEBUG ] No samples found: bcl2fastq [2024-07-09 18:01:18,399] multiqc [DEBUG ] No samples found: interop [2024-07-09 18:01:18,403] multiqc [DEBUG ] No samples found: ivar [2024-07-09 18:01:18,408] multiqc [DEBUG ] No samples found: flash [2024-07-09 18:01:18,413] multiqc [DEBUG ] No samples found: seqyclean [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-07-09 18:01:18,413] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-07-09 18:01:18,414] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-07-09 18:01:18,414] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-07-09 18:01:18,414] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-07-09 18:01:18,414] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-07-09 18:01:18,414] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-07-09 18:01:18,414] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-07-09 18:01:18,638] multiqc [INFO ] Compressing plot data [2024-07-09 18:01:18,730] multiqc [INFO ] Report : multiqc_report.html [2024-07-09 18:01:18,730] multiqc [INFO ] Data : multiqc_data [2024-07-09 18:01:18,730] multiqc [DEBUG ] Moving data file from '/state/partition1/job-48319728/tmpm0imobuw/multiqc_data' to '/vast/gencore/GENEFLOW/work/f5/3588ccfaa1f2c617e47f50be9cf894/merged/multiqc_data' [2024-07-09 18:01:19,001] multiqc [INFO ] MultiQC complete