FastQCFastQC Report
Tue 9 Jul 2024
HFHGFDRX5_n01_YTW272_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFHGFDRX5_n01_YTW272_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19618481
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACTATC1674685885.36266390858701No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGATCGGA2197041.1198828288489817No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACTAAG2039721.0396931342441855No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACTAGA1853930.9449916127553403No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACAGAT1750860.8924544158133344No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATAGATCGGAAGAGCAC1533440.7816303413092991No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGAAGATC1455670.7419891478856084No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGAGATCG1405480.7164061274672591No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTAGATCGGAAGAG1139870.5810184794633183No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAAGATCGG868940.44291910265631673No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACTATA813960.4148945068682942No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACAGATCGGAAG593630.3025871370979231No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTAGATCGGAAGAGC590020.30074703541013187No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTAGATCGGAAGAGCA565120.28805492127550547No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGAGATCGGAA508040.2589599062231169No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTAAGATCGGAAGA308330.15716303418190225No Hit
GTCGTAAGCAATATTTCAAGATGCATGCGTCAATTTTACGCAGACTATCT226860.1156358639590904No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACTACC218560.11140515924754828No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCGGACTATC210830.10746499690776264No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)