HFGFNBGXB_n02_undetermined.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFGFNBGXB_n02_undetermined.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	38845851
Sequences flagged as poor quality	0
Sequence length	47
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1817599	4.679004200474331	No Hit
ATTGACCCGCGTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	280154	0.7211941373095417	No Hit
ATTGACCCGCGTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	180449	0.46452579967935315	No Hit
ATTGACCCGCGTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	145731	0.37515203361100263	No Hit
CAGTAGTCACGGTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	139189	0.35831111023928913	No Hit
CAGTAGTCACGGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	120249	0.3095542944856582	No Hit
CAGTAGTCACGGTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	118426	0.30486138661243384	No Hit
CTCCTCTGCAATTACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	116036	0.29870886339959446	No Hit
CTCCTCTGCAATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	110393	0.28418221549580674	No Hit
TGCAATTACCCGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	98133	0.25262157340818714	No Hit
CAGTAGTCACGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	79856	0.20557150363368276	No Hit
TGCAATTACCCGGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	79287	0.20410673973907792	No Hit
CTCCTCTGCAATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	59702	0.15368951500122882	No Hit
TGCAATTACCCGGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	55078	0.14178605586475632	No Hit
ATTGACCCGCGTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	52473	0.1350800629905109	No Hit
CTCCTCTGCAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	50334	0.12957368342889436	No Hit
ACTTCCGTCGATCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	40161	0.10338555847315585	No Hit
GAGGTTAGTGATGGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	39020	0.10044830785146142	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCCGCG	100550	40.739002	5
GTCACGG	79785	40.656662	6
GCGTTAG	99060	40.618584	9
CGCGTTA	101865	40.601715	8
GACCCGC	104080	40.53797	4
AGTAGTC	81780	40.53225	2
CCCGCGT	98850	40.511528	6
TCACGGT	74590	40.498844	7
GTAGTCA	81235	40.49244	3
CACGGTC	73775	40.40676	8
CGTTAGC	28720	40.219414	10
TGACCCG	105685	40.099083	3
CGACGTA	9925	39.945484	4
TACCCGG	33200	39.896496	7
TCCGTCG	13610	39.80896	4
ACCCGGA	33320	39.80439	8
CCCGGAT	32380	39.802555	9
GACGTAG	9745	39.59053	5
GTTAGCA	29340	39.420616	11
CGGTCAT	19420	39.28383	10