Sample Filename File type Encoding Total Sequences Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage avg_sequence_length basic_statistics per_base_sequence_quality per_tile_sequence_quality per_sequence_quality_scores per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content HFGF5BGXH_n01_10X_CD8_ADT HFGF5BGXH_n01_10X_CD8_ADT.fastq.gz Conventional base calls Sanger / Illumina 1.9 42094819.0 0.0 26.0 46.0 96.78563187072665 26.0 pass pass pass pass fail pass pass pass pass pass pass HFGF5BGXH_n01_10X_CD8_GEX_1 HFGF5BGXH_n01_10X_CD8_GEX_1.fastq.gz Conventional base calls Sanger / Illumina 1.9 47881634.0 0.0 26.0 48.0 94.08846246129195 26.0 pass pass pass pass pass pass pass pass pass pass pass HFGF5BGXH_n01_10X_CD8_GEX_2 HFGF5BGXH_n01_10X_CD8_GEX_2.fastq.gz Conventional base calls Sanger / Illumina 1.9 54688634.0 0.0 26.0 48.0 93.58058782083522 26.0 pass pass pass pass pass pass pass pass pass pass pass HFGF5BGXH_n01_10X_CD8_GEX_3 HFGF5BGXH_n01_10X_CD8_GEX_3.fastq.gz Conventional base calls Sanger / Illumina 1.9 50795505.0 0.0 26.0 48.0 93.83959049100345 26.0 pass pass pass pass pass pass pass pass pass pass pass HFGF5BGXH_n01_10X_CD8_GEX_4 HFGF5BGXH_n01_10X_CD8_GEX_4.fastq.gz Conventional base calls Sanger / Illumina 1.9 50054151.0 0.0 26.0 48.0 93.86126404576416 26.0 pass pass pass pass pass pass pass pass pass pass pass HFGF5BGXH_n01_10X_CD8_HTO HFGF5BGXH_n01_10X_CD8_HTO.fastq.gz Conventional base calls Sanger / Illumina 1.9 12438531.0 0.0 26.0 47.0 77.20002737961205 26.0 pass pass pass pass warn pass pass pass pass pass pass HFGF5BGXH_n01_10X_CD8_ORF_1 HFGF5BGXH_n01_10X_CD8_ORF_1.fastq.gz Conventional base calls Sanger / Illumina 1.9 33611400.0 0.0 26.0 49.0 30.178333150690523 26.0 pass pass pass pass warn pass pass pass fail pass pass HFGF5BGXH_n01_10X_CD8_ORF_2 HFGF5BGXH_n01_10X_CD8_ORF_2.fastq.gz Conventional base calls Sanger / Illumina 1.9 31483622.0 0.0 26.0 49.0 30.317304728813845 26.0 pass pass pass pass warn pass pass pass fail pass pass HFGF5BGXH_n01_10X_CD8_ORF_3 HFGF5BGXH_n01_10X_CD8_ORF_3.fastq.gz Conventional base calls Sanger / Illumina 1.9 27368327.0 0.0 26.0 49.0 31.089346291876574 26.0 pass pass pass pass warn pass pass pass fail pass pass HFGF5BGXH_n01_10X_CD8_ORF_4 HFGF5BGXH_n01_10X_CD8_ORF_4.fastq.gz Conventional base calls Sanger / Illumina 1.9 30466807.0 0.0 26.0 49.0 30.792380503921397 26.0 pass pass pass pass warn pass pass pass fail pass pass HFGF5BGXH_n01_10X_CD8_TCR_1 HFGF5BGXH_n01_10X_CD8_TCR_1.fastq.gz Conventional base calls Sanger / Illumina 1.9 7114272.0 0.0 26.0 49.0 35.98906669356373 26.0 pass pass pass pass pass pass pass pass fail pass pass HFGF5BGXH_n01_10X_CD8_TCR_2 HFGF5BGXH_n01_10X_CD8_TCR_2.fastq.gz Conventional base calls Sanger / Illumina 1.9 6401057.0 0.0 26.0 49.0 37.70158006631789 26.0 pass pass pass pass pass pass pass pass fail pass pass HFGF5BGXH_n01_10X_CD8_TCR_3 HFGF5BGXH_n01_10X_CD8_TCR_3.fastq.gz Conventional base calls Sanger / Illumina 1.9 8130726.0 0.0 26.0 49.0 33.78902507710487 26.0 pass pass pass pass pass pass pass pass fail pass pass HFGF5BGXH_n01_10X_CD8_TCR_4 HFGF5BGXH_n01_10X_CD8_TCR_4.fastq.gz Conventional base calls Sanger / Illumina 1.9 7826920.0 0.0 26.0 49.0 34.270209823237266 26.0 pass pass pass pass pass pass pass pass fail pass pass HFGF5BGXH_n01_undetermined HFGF5BGXH_n01_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 32478011.0 0.0 26.0 48.0 60.21904043967228 26.0 pass pass pass pass pass pass pass pass warn warn pass HFGF5BGXH_n02_10X_CD8_ADT HFGF5BGXH_n02_10X_CD8_ADT.fastq.gz Conventional base calls Sanger / Illumina 1.9 42094819.0 0.0 49.0 48.0 96.46027158129978 49.0 pass pass pass pass fail fail pass pass pass warn pass HFGF5BGXH_n02_10X_CD8_GEX_1 HFGF5BGXH_n02_10X_CD8_GEX_1.fastq.gz Conventional base calls Sanger / Illumina 1.9 47881634.0 0.0 49.0 49.0 31.48387994034627 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_10X_CD8_GEX_2 HFGF5BGXH_n02_10X_CD8_GEX_2.fastq.gz Conventional base calls Sanger / Illumina 1.9 54688634.0 0.0 49.0 49.0 30.861027111184175 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_10X_CD8_GEX_3 HFGF5BGXH_n02_10X_CD8_GEX_3.fastq.gz Conventional base calls Sanger / Illumina 1.9 50795505.0 0.0 49.0 49.0 30.95589600674873 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_10X_CD8_GEX_4 HFGF5BGXH_n02_10X_CD8_GEX_4.fastq.gz Conventional base calls Sanger / Illumina 1.9 50054151.0 0.0 49.0 49.0 30.988195448446866 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_10X_CD8_HTO HFGF5BGXH_n02_10X_CD8_HTO.fastq.gz Conventional base calls Sanger / Illumina 1.9 12438531.0 0.0 49.0 44.0 75.94407971254587 49.0 pass pass pass pass fail fail pass pass pass fail pass HFGF5BGXH_n02_10X_CD8_ORF_1 HFGF5BGXH_n02_10X_CD8_ORF_1.fastq.gz Conventional base calls Sanger / Illumina 1.9 33611400.0 0.0 49.0 55.0 16.203666162621165 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_10X_CD8_ORF_2 HFGF5BGXH_n02_10X_CD8_ORF_2.fastq.gz Conventional base calls Sanger / Illumina 1.9 31483622.0 0.0 49.0 55.0 16.41278824127358 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_10X_CD8_ORF_3 HFGF5BGXH_n02_10X_CD8_ORF_3.fastq.gz Conventional base calls Sanger / Illumina 1.9 27368327.0 0.0 49.0 55.0 16.762524768282017 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_10X_CD8_ORF_4 HFGF5BGXH_n02_10X_CD8_ORF_4.fastq.gz Conventional base calls Sanger / Illumina 1.9 30466807.0 0.0 49.0 55.0 16.514383564015144 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_10X_CD8_TCR_1 HFGF5BGXH_n02_10X_CD8_TCR_1.fastq.gz Conventional base calls Sanger / Illumina 1.9 7114272.0 0.0 49.0 52.0 20.20434719490859 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_10X_CD8_TCR_2 HFGF5BGXH_n02_10X_CD8_TCR_2.fastq.gz Conventional base calls Sanger / Illumina 1.9 6401057.0 0.0 49.0 52.0 20.434241731603144 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_10X_CD8_TCR_3 HFGF5BGXH_n02_10X_CD8_TCR_3.fastq.gz Conventional base calls Sanger / Illumina 1.9 8130726.0 0.0 49.0 52.0 19.99179644186566 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_10X_CD8_TCR_4 HFGF5BGXH_n02_10X_CD8_TCR_4.fastq.gz Conventional base calls Sanger / Illumina 1.9 7826920.0 0.0 49.0 52.0 20.029778441687643 49.0 pass pass pass pass warn warn pass pass fail fail pass HFGF5BGXH_n02_undetermined HFGF5BGXH_n02_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 32478011.0 0.0 49.0 53.0 30.47764930467537 49.0 pass pass pass pass warn fail pass pass fail fail pass