HFCWMBGXY_n01_sv126.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFCWMBGXY_n01_sv126.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	34088919
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC	893617	2.621429561905439	TruSeq Adapter, Index 6 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	94690	42.99771	44
GATCGGA	94755	42.986134	1
CGCCAAT	94655	42.816135	33
ATCGGAA	96480	42.765133	2
CGTCTGA	95970	42.76217	16
GTCACGC	95055	42.739765	29
ACGTCTG	96175	42.691105	15
TCGTATG	95425	42.662106	43
TCTCGTA	95220	42.654613	41
CTCGTAT	95205	42.64516	42
ACGCCAA	95290	42.601093	32
ACACGTC	96555	42.595554	13
TATCTCG	95485	42.52011	39
TCGGAAG	97180	42.45458	3
CGGAAGA	97310	42.38662	4
TCACGCC	95940	42.33404	30
AGTCACG	96245	42.295357	28
CACGCCA	96055	42.281067	31
ATCTCGT	96175	42.237926	40
GCACACG	97845	42.04521	11