HFCWMBGXY_n01_sv124.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFCWMBGXY_n01_sv124.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	40467126
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC	2571597	6.354780421026193	TruSeq Adapter, Index 4 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	276200	43.346195	1
ATCGGAA	281685	43.288315	2
TCGGAAG	282215	43.18041	3
CGTATGC	278980	43.05233	44
CGTCTGA	282095	43.030956	16
ACACGTC	282420	43.013657	13
ACGTCTG	282395	42.99156	15
CGGAAGA	283400	42.967255	4
GCACACG	283915	42.807972	11
TCGTATG	280960	42.739582	43
AATCTCG	276195	42.730938	39
CACACGT	284330	42.729355	12
CTCGTAT	277500	42.727264	42
TCTCGTA	277060	42.72451	41
CACGTCT	284480	42.707962	14
ATCTCGT	277500	42.59018	40
ACTGACC	284850	42.054058	32
ACCAATC	279675	42.046207	36
GAACTCC	288535	41.92311	21
GACCAAT	283760	41.909798	35