HFCWMBGXY_n01_sv123.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFCWMBGXY_n01_sv123.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35526367
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	1300694	3.6612074631779823	TruSeq Adapter, Index 2 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	137085	43.102745	44
GATCGGA	137810	42.873913	1
CGATGTA	137385	42.869396	34
CACCGAT	137930	42.807945	31
ACCGATG	137750	42.807487	32
CTCGTAT	137570	42.76862	42
CGTCTGA	139570	42.763275	16
TCTCGTA	137385	42.749355	41
ACACGTC	139885	42.74519	13
TCGTATG	138105	42.74139	43
ATCGGAA	140350	42.737328	2
CCGATGT	137800	42.714226	33
GTCACCG	138370	42.711815	29
ACGTCTG	140030	42.63833	15
TATCTCG	137815	42.60007	39
TCGGAAG	141045	42.50592	3
ATCTCGT	138320	42.469925	40
TCACCGA	139160	42.459797	30
CGGAAGA	141520	42.293243	4
GCACACG	141375	42.28217	11