FastQCFastQC Report
Tue 12 Dec 2023
HFC3NDRX3_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFC3NDRX3_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1002673736
Sequences flagged as poor quality0
Sequence length10
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAGGATAT22184322922.125166047034067No Hit
CCCACCACAA21929724721.871246760172443No Hit
AAGATTGGAT15344726315.30380795772634No Hit
TTGCCCGTGC13819350913.782500133223794No Hit
CGGCTGGATG13597507713.561248501676124No Hit
AAGGGCCGCA910518989.080909844436176No Hit
GGGGGGGGGG121362231.2103860472515657No Hit
CCCCCACAAA22654720.22594308783211214No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)