FastQCFastQC Report
Thu 15 Aug 2024
HFC3LDRX5_l01_n02_AT082.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFC3LDRX5_l01_n02_AT082.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2486007
Sequences flagged as poor quality0
Sequence length99
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA142840.5745760168816902No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT67850.2729276305336228No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44520.17908235978418402No Hit
GAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAAGAGCCC32800.13193848609436737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)