FastQCFastQC Report
Thu 15 Aug 2024
HFC3LDRX5_l01_n01_AT101.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFC3LDRX5_l01_n01_AT101.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10622130
Sequences flagged as poor quality0
Sequence length99
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA144690.1362156177715769No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTATCTCATCTCGTAT114750.10802918058807415TruSeq Adapter, Index 22 (97% over 37bp)
CGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTA106970.10070484921574109No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)