| Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
|---|
| 1 | AH6851-6h | ATGTCA | N | lane_1 | 15,348 | 100.00 | 101,641,000 | 30.88 | 97.48 | 2.52 | 84.75 | 34.01 | ||
| 1 | AH8049-6h | ACAGTG | N | lane_1 | 12,260 | 100.00 | 81,191,396 | 24.67 | 98.23 | 1.77 | 83.99 | 33.82 | ||
| 1 | AH8057-6h | GTCCGC | N | lane_1 | 4,171 | 100.00 | 27,620,842 | 8.39 | 95.68 | 4.32 | 83.87 | 33.81 | ||
| 1 | AH8217-6h | GTGAAA | N | lane_1 | 15,965 | 100.00 | 105,728,516 | 32.13 | 96.74 | 3.26 | 85.42 | 34.15 | ||
| 1 | lane1 | unknown | Undetermined | Clusters with unmatched barcodes for lane 1 | N | Undetermined_indices | 1,951 | 100.00 | 12,919,104 | 3.93 | 0.00 | 0.00 | 60.63 | 27.06 |
| 2 | AH2640-6h | GTCCGC | N | lane_2 | 10,196 | 100.00 | 67,524,320 | 28.71 | 97.63 | 2.37 | 89.54 | 35.09 | ||
| 2 | AH6851-4h | CTTGTA | N | lane_2 | 2,612 | 100.00 | 17,299,724 | 7.36 | 98.28 | 1.72 | 90.63 | 35.34 | ||
| 2 | AH6851-6h | GCCAAT | N | lane_2 | 19,034 | 100.00 | 126,052,734 | 53.59 | 98.04 | 1.96 | 90.68 | 35.38 | ||
| 2 | GS5082 | AGTCAA | N | lane_2 | 1,366 | 100.00 | 9,048,894 | 3.85 | 96.93 | 3.07 | 91.64 | 35.62 | ||
| 2 | GS5662 | AGTTCC | N | lane_2 | 1,330 | 100.00 | 8,806,868 | 3.74 | 97.42 | 2.58 | 91.30 | 35.48 | ||
| 2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 976 | 100.00 | 6,465,796 | 2.75 | 0.00 | 0.00 | 81.19 | 32.46 |
| SampleID | Recipe | Operator | Directory |
|---|
| AH6851-6h | /export/data1/gencore/demux/HF7C2ADXX/bcl2fastq/Unaligned/Project_lane_1/Sample_AH6851-6h | ||
| AH8049-6h | /export/data1/gencore/demux/HF7C2ADXX/bcl2fastq/Unaligned/Project_lane_1/Sample_AH8049-6h | ||
| AH8057-6h | /export/data1/gencore/demux/HF7C2ADXX/bcl2fastq/Unaligned/Project_lane_1/Sample_AH8057-6h | ||
| AH8217-6h | /export/data1/gencore/demux/HF7C2ADXX/bcl2fastq/Unaligned/Project_lane_1/Sample_AH8217-6h | ||
| lane1 | /export/data1/gencore/demux/HF7C2ADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane1 | ||
| AH2640-6h | /export/data1/gencore/demux/HF7C2ADXX/bcl2fastq/Unaligned/Project_lane_2/Sample_AH2640-6h | ||
| AH6851-4h | /export/data1/gencore/demux/HF7C2ADXX/bcl2fastq/Unaligned/Project_lane_2/Sample_AH6851-4h | ||
| GS5082 | /export/data1/gencore/demux/HF7C2ADXX/bcl2fastq/Unaligned/Project_lane_2/Sample_GS5082 | ||
| GS5662 | /export/data1/gencore/demux/HF7C2ADXX/bcl2fastq/Unaligned/Project_lane_2/Sample_GS5662 | ||
| lane2 | /export/data1/gencore/demux/HF7C2ADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane2 |
bcl2fastq-1.8.4