FastQCFastQC Report
Thu 28 Jul 2022
HF5FTDRX2_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHF5FTDRX2_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2210580219
Sequences flagged as poor quality0
Sequence length10
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACTGAGAA55163872924.95447684995321No Hit
TATTGAGGCA52519835123.758393678089814No Hit
GCCCGATGGA51456371023.277314506721368No Hit
TCTTACTTGC46566731121.065388489301416No Hit
GGGGGGGGGG971974484.396920191567135No Hit
GCCGATGGAA30683630.13880351292512855No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)