HF2CNAFX2_n01_RPE-1_WT_03.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HF2CNAFX2_n01_RPE-1_WT_03.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8333050
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	52118	0.6254372648670055	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTAT	40473	0.48569251354546056	TruSeq Adapter, Index 13 (97% over 40bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	28062	0.3367554496852893	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	26792	0.32151493150767124	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	18029	0.2163553560821068	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	15681	0.1881783980655342	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	13660	0.16392557346949796	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	10032	0.12038809319516865	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	9528	0.1143398875561769	No Hit
GGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAATTCATT	8637	0.10364752401581653	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	4685	62.976162	48
TCGTATG	4810	62.50378	45
CGTATGC	5130	58.263783	46
AATCTCG	5080	57.045948	41
ATGCCGT	5310	55.036415	49
ACACGTC	6160	52.499123	13
TGCCGTC	5555	52.231033	50
ATCTCGT	5555	52.04202	42
ACGTCTG	6265	51.116463	15
GTATGCC	5855	51.04922	47
GCCGTCT	5460	50.319366	51
CTCGTAT	5755	50.111805	44
TCTCGTA	5765	50.08559	43
CACACGT	6645	48.72003	12
CCGATCG	1930	48.603138	70
AGTCAAC	6675	47.08677	34
GTCCGGT	1625	46.755356	1
GCACACG	6955	46.397503	11
CACGTCT	7110	45.139893	14
CGTCTGA	7075	45.066383	16