HCY5TAFX2_n01_WT_4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HCY5TAFX2_n01_WT_4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	82025354
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	668661	0.8151881916900963	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	393116	0.479261570757744	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	355344	0.43321239430432695	No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC	312523	0.3810078040016749	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	247146	0.3013043991251778	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	242557	0.29570978748839044	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	224625	0.27384825428488857	No Hit
CTCATTTGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTC	173676	0.2117345327153358	No Hit
AGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGCTTCCA	172269	0.21001920942639274	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	163646	0.19950660621348856	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC	153702	0.18738352534266417	TruSeq Adapter, Index 6 (100% over 50bp)
GGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCT	120388	0.1467692538090113	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	99851	0.12173187329371354	No Hit
GGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGA	83663	0.10199651195653481	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	20155	58.77862	46
TCGTATG	21405	54.332367	43
CGCCAAT	27555	50.538525	33
ACGCCAA	27935	49.211853	32
TATCTCG	26700	46.375885	39
CGATCGG	49200	45.84281	70
ACGTCTG	32590	42.568962	15
CGTATGC	28120	42.179337	44
ACACGTC	33460	41.69223	13
CGTCTGA	33410	41.34609	16
ATGCCGT	28515	40.315277	47
AGTCACG	35140	39.231064	28
ATCTCGT	31945	38.75035	40
GTATGCC	31365	38.518467	45
CCGATCG	126365	38.1628	70
TCTCGTA	31490	37.554245	41
CACACGT	37575	37.135647	12
TGCCGTC	31105	36.080555	48
CCCGATC	137335	35.148026	69
CACGTCT	39710	35.147873	14