HCY5TAFX2_n01_WT_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HCY5TAFX2_n01_WT_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18047775
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	94278	0.522380182598686	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	73696	0.40833842398855263	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	58878	0.32623412027244353	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	48409	0.26822696980652744	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC	44914	0.24886170178872466	TruSeq Adapter, Index 4 (100% over 50bp)
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC	41211	0.22834393713352477	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	40765	0.22587271838218284	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	33096	0.18337994572738192	No Hit
CTCATTTGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTC	26694	0.1479074290321106	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	6580	60.04907	46
TCGTATG	6725	58.70229	43
ACACGTC	9000	49.229958	13
CGTATGC	8150	49.168404	44
ACGTCTG	8950	49.113945	15
CGTCTGA	9280	47.14116	16
ATGCCGT	8335	45.570133	47
GATCGGA	9740	45.018826	1
GTATGCC	9165	43.914062	45
CACACGT	10105	43.673397	12
GACCAAT	9520	42.607723	35
CCGATCG	16010	42.565582	70
TGCCGTC	8980	42.297	48
AATCTCG	8635	40.97599	39
ATCGGAA	10880	40.76654	2
CGGAAGA	11140	40.285892	4
CACGTCT	10990	40.28386	14
GCCGTCT	8670	40.21577	49
TCGGAAG	11085	40.138397	3
GCACACG	11210	39.618156	11