HCY5TAFX2_n01_WT_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HCY5TAFX2_n01_WT_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11184148
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	29462	0.2634264138850809	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	25333	0.22650808984287402	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	21441	0.19170883647104814	No Hit
CTCATTTGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTC	20496	0.18325937746889617	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	17506	0.15652511036155814	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	14792	0.132258621756436	No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC	14559	0.13017531599188423	No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT	13555	0.12119832462875134	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATCGCGT	1210	60.739178	40
ACCGATG	6645	59.62005	32
TATGCCG	2145	57.268368	46
CGCGTAT	890	55.83845	42
GTCACCG	7100	55.79982	29
TGTATCG	3415	54.52001	37
CACCGAT	7370	54.135006	31
TCACCGA	7495	53.326023	30
GTATCGC	2040	52.83912	38
CGATGTA	7500	52.682896	34
ACACGTC	7865	51.48369	13
CCGATGT	7730	51.296917	33
ACGTCTG	7890	50.78828	15
CGTCTGA	8220	48.791912	16
CACACGT	8450	47.71235	12
TCGCGTA	1055	47.43715	41
GATGTAT	8430	45.874535	35
TCGTATG	1970	45.83408	43
GCACACG	8915	45.26316	11
ATGTATC	7955	45.225975	36