HCY5TAFX2_n01_N2_04.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HCY5TAFX2_n01_N2_04.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5714273
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	20336	0.35588079183476184	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	19072	0.3337607426176523	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	11967	0.2094229659660993	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTAT	10457	0.18299790717034345	TruSeq Adapter, Index 14 (97% over 44bp)
GTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGCGGAGGAG	10213	0.1787278976695723	No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT	9527	0.1667228709583879	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	8443	0.14775282875004397	No Hit
GGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAATTCATT	8374	0.1465453260633505	No Hit
CTCATTTGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTC	7857	0.1374978059326182	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7732	0.13531030106541986	No Hit
GGCGGGGGTGCGTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACT	6085	0.10648773693521468	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	1505	59.315483	48
ATCGCGT	490	59.28227	42
CGCGTAT	385	56.360363	44
GTTCCGT	3360	55.93523	35
TCCGTAT	3310	55.72232	37
TCGTATG	1345	55.164078	45
AGTTCCG	3495	54.275333	34
CCGTATC	3235	53.551754	38
GTATCGC	830	53.12944	40
CGTATCG	1270	49.327843	39
CGTATCT	2260	48.935207	39
TTCCGTA	3860	48.599064	36
ACGTCTG	3935	48.56177	15
CGTATGC	1755	48.2593	46
ACACGTC	4060	47.411453	13
TATCTCG	1970	47.256138	41
CACACGT	4260	44.774784	12
CGTCTGA	4340	43.788162	16
TCGCGTA	505	43.660828	43
CACGTCT	4385	43.65805	14