HCY5TAFX2_n01_N2_02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HCY5TAFX2_n01_N2_02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9897750
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGCTTCCA	36807	0.37187239524134275	No Hit
CTCATTTGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTC	29654	0.2996034452274507	No Hit
GGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCT	18394	0.18584021621075497	No Hit
CAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGCTTCCATG	17145	0.17322118663332575	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	16691	0.16863428556995277	No Hit
GGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGA	14982	0.15136773509130863	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	13306	0.13443459372079514	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	12825	0.12957490338713346	No Hit
ATTTGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTA	12728	0.12859488267535552	No Hit
GCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAA	11386	0.1150362456113763	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	1900	56.917595	46
TCGTATG	2115	47.491207	43
CGTATGC	2340	47.26209	44
ATCGCGG	2905	46.865337	34
TCGACGT	1495	46.3517	45
TCGCGGC	3020	45.080727	35
TATCGCG	3005	45.072823	33
GTCGTAT	1230	42.964874	42
ATATCGC	3145	42.95468	32
CTCGACG	1705	41.46376	44
CGACGTA	1750	39.797585	46
GTCGGTT	1590	39.64567	1
GCTCGAC	1845	39.64529	43
CGTCTGA	4950	38.95723	16
CTAGTAC	3580	38.712933	9
CGATCGG	1370	37.55626	70
ACGTCTG	5160	37.507416	15
ATGCCGT	2515	36.746243	47
ACACGTC	5410	35.90355	13
CGCGTAT	225	35.775604	42