HCY5TAFX2_n01_N2_01.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HCY5TAFX2_n01_N2_01.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14433464
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	91225	0.6320381579917336	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	45481	0.31510800179360965	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	37859	0.2623001657814091	No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT	34574	0.23954055658433762	No Hit
CTCATTTGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTC	27664	0.1916657013174384	No Hit
GGCGGGGGTGCGTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACT	27337	0.18940013291334637	No Hit
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	26892	0.18631701994753302	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	20681	0.14328507695727097	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	19952	0.1382343143683318	No Hit
GGGGTGCGTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTTCGG	18551	0.12852770478382736	No Hit
GTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTTCGGAGGGAAC	17819	0.12345615716365801	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATCGCGT	960	51.4033	40
TATGCCG	1410	46.66399	46
CGCGTAT	615	45.52584	42
CATCGCG	1735	43.167698	39
CGTCTGA	8660	42.63612	16
ACGTCTG	8660	42.555294	15
ACACGTC	8795	42.140842	13
CACACGT	9460	39.363487	12
TATCGCG	3995	38.371162	33
GCACACG	9980	37.593033	11
CACGTCT	9975	37.120674	14
AGGGGGG	13665	36.21012	1
ATATCGC	4310	35.56665	32
ATCGCGG	4375	35.118107	34
TCGACGT	1835	35.093353	45
ACCAGAT	10635	34.981777	32
GTCGGTT	1710	34.404133	1
CCGATCG	4235	33.638042	70
TCGCGGC	4640	33.414146	35
CTAGTAC	4785	32.40148	9