FastQCFastQC Report
Mon 15 Jun 2020
HCWY5BGXF_n01_ChiP-zmm16.shoot-line14-input2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCWY5BGXF_n01_ChiP-zmm16.shoot-line14-input2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6444327
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC52300.08.76814270
ATGCCGT9051.6370905E-108.51044947
CGTATGC10302.8012437E-107.81667144
CACACGT61600.07.67168969
ACGTCTG40750.07.215885670
CACGTCT47050.07.14248970
GCACACG68400.06.96018570
CGTCTGA40500.06.74182670
TATGCCG12053.5311314E-76.101135346
CTCGTAT11601.1591455E-66.03493942
ATCGGAA162350.05.95106670
TCTGAAC39200.05.893806569
GATCGGA176650.05.865648770
GAGCACA100900.05.863183570
TAGATCG64850.05.829774470
TCGTATG14858.861025E-85.65730143
AGATCGG184350.05.6206569
AGAGCAC111300.05.59838670
AGCACAC89800.05.535412368
GAAGAGC136550.05.434781670
Produced by FastQC (version 0.11.5)