FastQCFastQC Report
Mon 15 Jun 2020
HCWY5BGXF_n01_ChiP-zmm16.shoot-line14-input1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCWY5BGXF_n01_ChiP-zmm16.shoot-line14-input1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7332245
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC11454.1836756E-117.643067444
CGTCTGA136450.06.90052770
CTCCAGT65650.06.82462570
CCAGTCA54050.06.79981570
ACACGTC174400.06.7436770
ATGCCGT13502.4738256E-106.742256647
CACGTCT158650.06.707134270
CTGAACT111900.06.66283369
ACGTCTG141650.06.64729869
TCCAGTC57100.06.55929469
ACTCCAG67950.06.54219869
TCTGAAC116050.06.3643368
CACACGT196150.06.263575670
CAGTCAC48600.06.193921670
GTCTGAA131050.06.08977670
TGAACTC125300.06.034012370
GCACACG215650.05.89197270
CTCGTAT14354.319554E-85.854096442
GAGCACA277950.05.692136370
ATCGGAA446050.05.634357570
Produced by FastQC (version 0.11.5)