FastQCFastQC Report
Mon 15 Jun 2020
HCWY5BGXF_n01_ChiP-zmm16.shoot-line12-input2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCWY5BGXF_n01_ChiP-zmm16.shoot-line12-input2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7376749
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACACGT34650.06.97040570
ACGTCTG22700.06.939030670
CACGTCT27350.06.399187670
GCACACG37500.06.34722569
AGATCGG102050.06.20837270
ACACGTC28600.05.874722570
ATCGGAA88900.05.551745470
TAGATCG44850.05.541254570
CTTAACG7600.0084394895.526991
GATCGGA98950.05.48312470
AGAGCAC72700.05.3925770
TCGGAAG90200.05.161278270
Produced by FastQC (version 0.11.5)