FastQCFastQC Report
Mon 15 Jun 2020
HCWY5BGXF_n01_ChiP-zmm16.root-line15-input2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCWY5BGXF_n01_ChiP-zmm16.root-line15-input2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7947111
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC12251.4661055E-96.858054646
AGATCGG63700.05.93444470
ATCGGAA58650.05.788981469
ATGCCGT14101.1173706E-65.46182249
TATGCCG15006.4301275E-75.36744848
GATCGGA66100.05.34833268
GTCACGT11201.550098E-45.31220329
CACACGT26207.2759576E-125.076659770
AGTCACG11853.5955614E-45.020785328
Produced by FastQC (version 0.11.5)