FastQCFastQC Report
Mon 15 Jun 2020
HCWY5BGXF_n01_ChiP-zmm16.root-line14-input2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCWY5BGXF_n01_ChiP-zmm16.root-line14-input2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6865590
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC12650.019.6474344
TATGCCG14050.017.69096846
ATGCCGT14800.016.7945947
TCGTATG18900.014.07603243
CTCGTAT17800.013.76555742
GTATGCC22550.011.95366645
TCTCGTA22350.010.96309341
TAATCTC23550.010.70095538
GCCGTCT26300.010.5159249
TGCCGTC24400.010.47391248
CCAACTA27600.09.76364533
CAGTCAC26950.09.47962827
TCCAGTC30000.09.33231925
CTAATCT29000.09.17248537
AATCTCG26200.09.08476939
ACTAATC28150.09.07591936
ATCTCGT28200.08.93702240
CCGTCTT29900.08.89833550
AGTCACC29800.08.57301928
CCAGTCA31850.08.35074126
Produced by FastQC (version 0.11.5)