HCV3NBGXF_n01_AM75.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HCV3NBGXF_n01_AM75.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14690709
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC	857937	5.839997239071307	TruSeq Adapter, Index 10 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCGCGTATGC	54963	0.3741344274125912	TruSeq Adapter, Index 10 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATTC	27827	0.1894190402927456	TruSeq Adapter, Index 10 (98% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	23678	0.1611767001851306	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGGATGC	22706	0.15456027343540737	TruSeq Adapter, Index 10 (98% over 50bp)
GTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAA	15550	0.10584921394876178	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	101005	68.12792	46
TAGCTTA	121885	67.96847	34
ATGCCGT	96210	67.63041	47
ACTAGCT	123325	67.61994	32
TATCTCG	104285	67.51798	39
GTATGCC	104465	67.19012	45
CACTAGC	124815	67.15412	31
TCACTAG	125480	67.13874	30
GTCACTA	126205	66.85312	29
CTAGCTT	124095	66.82854	33
AGCTTAT	122165	66.77272	35
CTTATCT	107955	66.63339	37
TTATCTC	106295	66.52157	38
CTCGTAT	100760	66.420204	42
CACACGT	129000	66.34381	12
CGTATGC	104700	66.310585	44
TGCCGTC	95235	66.2905	48
CGTCTGA	128950	66.24038	16
ACGTCTG	129075	66.20562	15
GCACACG	129785	65.98479	11