HCV3NBGXF_n01_AM71.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HCV3NBGXF_n01_AM71.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13626344
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC	1070447	7.855716837913383	TruSeq Adapter, Index 6 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	34963	0.2565838643145953	No Hit
TCCGGTTCCACTCCAGCGATTTCACGTTCTCTTGAACTCTCTCTTCAAAG	19599	0.14383168368566066	No Hit
GCCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTG	16724	0.12273284749012647	No Hit
CCGGTTTGTCCCTCTTAACCATTAAATCAGTTCTAGAACCAACAAAAAGA	16614	0.12192558767047125	No Hit
CCCGGTTTGTCCCTCTTAACCATTAAATCAGTTCTAGAACCAACAAAAAG	14918	0.10947910899651439	No Hit
CCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGC	13876	0.10183215688668949	No Hit
GTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAA	13638	0.10008554018598093	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	120340	68.51783	46
ATGCCGT	120095	68.27559	47
TCACGCC	121365	68.01363	30
CACGCCA	121495	67.84868	31
GTCACGC	122855	67.79839	29
GTATGCC	121710	67.77772	45
TATCTCG	119960	67.76307	39
TGCCGTC	121130	67.411934	48
CGCCAAT	121930	67.2593	33
CTCGTAT	121590	67.19119	42
CGTATGC	122945	67.125336	44
GCCAATA	122010	67.097595	34
GCCGTCT	121135	67.085556	49
TCGTATG	124440	66.510155	43
ACGTCTG	128675	66.4056	15
CGTCTGA	128595	66.37343	16
ACGCCAA	124525	66.166595	32
CACACGT	129290	66.05453	12
ATATCTC	123505	65.869064	38
TCTCGTA	123845	65.840836	41