HCV3NBGXF_n01_AM67.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HCV3NBGXF_n01_AM67.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14847770
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	1781218	11.99653550667878	TruSeq Adapter, Index 2 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCGCGTATGC	52655	0.35463237913841605	TruSeq Adapter, Index 2 (98% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	29819	0.2008315053371651	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATATCGTATGC	26979	0.18170405387475697	TruSeq Adapter, Index 2 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATTC	26571	0.17895616648156593	TruSeq Adapter, Index 2 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTAGCTCGTATGC	22727	0.15306675682610923	TruSeq Adapter, Index 2 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGGATGC	20953	0.1411188346802247	TruSeq Adapter, Index 2 (98% over 50bp)
GCCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTG	15326	0.1032208877157984	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	205295	68.63819	46
ATGCCGT	199775	68.44095	47
TATCTCG	204415	68.325165	39
GTATGCC	208880	68.231674	45
CTCGTAT	204040	67.845	42
TGCCGTC	197940	67.80764	48
GTATCTC	206975	67.75401	38
GTCACCG	227430	67.72062	29
CGTATGC	209550	67.714554	44
TGTATCT	208580	67.71088	37
ATGTATC	217040	67.65812	36
GCCGTCT	194905	67.620895	49
AGTCACC	229175	67.54095	28
CACCGAT	227050	67.51155	31
TCACCGA	227670	67.50933	30
ACCGATG	226875	67.42787	32
CGTCTGA	233155	67.353455	16
TCGTATG	206085	67.341606	43
ACGTCTG	233440	67.300156	15
CCGATGT	226180	67.285355	33