FastQCFastQC Report
Sat 15 Feb 2020
HCTCMBGXF_n01_ChIP.zmm16-line15-input.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCTCMBGXF_n01_ChIP.zmm16-line15-input.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11199379
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCACGT25250.032.9888929
ACGTCCG27600.030.5606132
CGTATGC27650.027.97478146
AGTCACG30100.027.55712728
ACGTCTG30300.027.37547915
TATGCCG29300.026.996248
CTCGTAT27950.026.79818544
CACGTCT31600.026.69241514
CGCACAT29100.026.2201437
ACACGTC32350.025.64082513
ATGCCGT30400.025.55884249
GTCCGCA33500.024.86531634
TCCGCAC35900.023.39830635
TCACGTC37100.023.1123630
CCGCACA35350.022.77245936
CACACGT38100.022.32241612
GCACACG38250.022.14337511
TCGTATG35000.022.10027745
CGTCTGA39450.021.38090116
CGTCCGC39600.021.1233433
Produced by FastQC (version 0.11.5)