FastQCFastQC Report
Wed 21 Jun 2023
HCMTGBGXT_n01_DEL2_ShaAmpPoolHm-B_ab.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCMTGBGXT_n01_DEL2_ShaAmpPoolHm-B_ab.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2437895
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44380.18204229468455368No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)