FastQCFastQC Report
Wed 21 Jun 2023
HCMTGBGXT_n01_DEL2_LerAmpPoolHm-B_ab.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCMTGBGXT_n01_DEL2_LerAmpPoolHm-B_ab.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTTTCCAAATTTCTTAAATATACAAGCGATGAAATTGAGAAAAAGTAA28.0No Hit
AGTGGATTGGTTTTGGTGTTATTTTAAATAAATGAATTGGTTGAATGGGA28.0No Hit
GCTTTGCAGGTTACCTTTCTTTTGGACTCTAAGGAAGAGGACTAGAGCTT14.0No Hit
ATGTATGTGAAATTTTTTACATAATTTATAGCCAAATATCCCACATACAT14.0No Hit
AACCGAACCAAAACAGATTTGAAGCTAATAATCACGAATACAACCAAATG14.0No Hit
CGTGTTTACACCAGAAGAAGTTTGTGCTTGTACATGGAATCTGCCATGGA14.0No Hit
AAGATGAAAAAAAGACTGATCTAAGTGGTCCTTGGTTCTTTTTCAGTTTA14.0No Hit
ACTTTAACATGTTGATTCGATAATGCCTGCTTAGCTAGACACTGACCTAA14.0No Hit
GGTTATGATTCCCTTAATTTACCACGTTTAACCGAAATCGAATCAAACTC14.0No Hit
CAATTTTACTATGTGTAAGATCCACGGTGGAGTAGGAGAACATGGAGTTA14.0No Hit
AGAATTTATTAATTTATTAAATTTATGAAATTATCGAGGTTTTACTGTAC14.0No Hit
ATGTCGAGTTCTTAAGAGGTGTTGCTAATCCTCTTGGAATCAAGGTTTGT14.0No Hit
TCTTTCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGC14.0No Hit
ATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGAAACACTAGTTAGGCT14.0No Hit
ATTGTTGACCCCTCGTTGAAAATTTGGAATTATGCGGGATGTTTAGAAAC14.0No Hit
AAACCAGTCCGGCGGTTTGCGGGTGGGTCCGGGCCGGGTCAGGTGCACGT14.0No Hit
TCTGTATGTTATTGTATCACATAAGTCTCAGAGTTCTGACTCTTGAACAC14.0No Hit
AATGAGATTAGATTGAGATTTGTGAGATTGGGAGGGAGAGATGGAAAAAA14.0No Hit
ATACATTGAGAATATAGTGTTCACTAGATACAACTTTGACATACATTTTA14.0No Hit
AATAGAAAAGGGAAAGAGCTTGTTCTGATCAAACCTGATTAAAATGCTGT14.0No Hit
ATAATTGAAAAATGAGATTATTCAGGAATACACATTGAATGCGAAGATTA14.0No Hit
ATGGTCTCTTGTTGCTTGCACTGCATATTCTATAGGGAAGAGATTCGGGC14.0No Hit
CCCGCCAAAATTTTGTTTCAAAAACATTTTTCCGCCAAAAAATTTCCCGC14.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)