Sample Filename File type Encoding Total Sequences Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage avg_sequence_length basic_statistics per_base_sequence_quality per_tile_sequence_quality per_sequence_quality_scores per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content HCLMMAFX3_n01_11657chp_flag HCLMMAFX3_n01_11657chp_flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 3592505.0 0.0 151.0 36.0 90.92296199091682 151.0 pass warn pass pass pass warn pass pass pass pass pass HCLMMAFX3_n01_11657in_flag HCLMMAFX3_n01_11657in_flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 6786589.0 0.0 151.0 37.0 87.51369342124563 151.0 pass warn pass pass warn warn pass pass pass pass warn HCLMMAFX3_n01_11657spk-chp-Flag HCLMMAFX3_n01_11657spk-chp-Flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 7095513.0 0.0 151.0 37.0 85.8662617778867 151.0 pass warn pass pass warn pass pass pass pass pass warn HCLMMAFX3_n01_11657spk-in-Flag HCLMMAFX3_n01_11657spk-in-Flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 13128808.0 0.0 151.0 37.0 82.94971843075373 151.0 pass warn pass pass warn warn pass pass pass pass warn HCLMMAFX3_n01_11658chp_flag HCLMMAFX3_n01_11658chp_flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 8718456.0 0.0 151.0 38.0 84.09358370964652 151.0 pass warn pass pass pass warn pass pass pass warn pass HCLMMAFX3_n01_11658in_flag HCLMMAFX3_n01_11658in_flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 11910666.0 0.0 151.0 37.0 83.39566034704524 151.0 pass warn pass pass warn warn pass pass pass warn warn HCLMMAFX3_n01_11658spk-chp-Flag HCLMMAFX3_n01_11658spk-chp-Flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 8858772.0 0.0 151.0 38.0 83.68441982968288 151.0 pass warn pass pass warn warn pass pass pass pass pass HCLMMAFX3_n01_11658spk-in-Flag HCLMMAFX3_n01_11658spk-in-Flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 13195932.0 0.0 151.0 37.0 82.35802624093984 151.0 pass warn pass pass warn warn pass pass pass pass warn HCLMMAFX3_n01_undetermined HCLMMAFX3_n01_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 4960942.0 0.0 151.0 36.0 97.44660546278972 151.0 pass fail pass warn pass pass pass pass pass pass pass HCLMMAFX3_n02_11657chp_flag HCLMMAFX3_n02_11657chp_flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 3592505.0 0.0 151.0 36.0 91.55304412141221 151.0 pass warn pass pass warn warn pass pass pass warn pass HCLMMAFX3_n02_11657in_flag HCLMMAFX3_n02_11657in_flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 6786589.0 0.0 151.0 37.0 86.97443693158203 151.0 pass warn pass pass warn warn pass pass pass warn warn HCLMMAFX3_n02_11657spk-chp-Flag HCLMMAFX3_n02_11657spk-chp-Flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 7095513.0 0.0 151.0 38.0 92.17239856721763 151.0 pass fail pass warn warn warn pass pass pass warn warn HCLMMAFX3_n02_11657spk-in-Flag HCLMMAFX3_n02_11657spk-in-Flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 13128808.0 0.0 151.0 37.0 83.1955766674775 151.0 pass warn pass pass warn warn pass pass pass warn warn HCLMMAFX3_n02_11658chp_flag HCLMMAFX3_n02_11658chp_flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 8718456.0 0.0 151.0 38.0 83.83714728602575 151.0 pass warn pass pass warn fail pass pass pass warn pass HCLMMAFX3_n02_11658in_flag HCLMMAFX3_n02_11658in_flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 11910666.0 0.0 151.0 37.0 83.4501513300152 151.0 pass warn pass pass warn warn pass pass pass warn warn HCLMMAFX3_n02_11658spk-chp-Flag HCLMMAFX3_n02_11658spk-chp-Flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 8858772.0 0.0 151.0 37.0 85.71117793693878 151.0 pass warn pass pass warn warn pass pass pass warn pass HCLMMAFX3_n02_11658spk-in-Flag HCLMMAFX3_n02_11658spk-in-Flag.fastq.gz Conventional base calls Sanger / Illumina 1.9 13195932.0 0.0 151.0 37.0 81.88408827988893 151.0 pass warn pass pass warn warn pass pass pass warn warn HCLMMAFX3_n02_undetermined HCLMMAFX3_n02_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 4960942.0 0.0 151.0 35.0 96.76007825196423 151.0 pass fail pass warn warn warn pass pass pass fail pass