FastQCFastQC Report
Tue 7 Dec 2021
HCLMMAFX3_n01_11658in_flag.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCLMMAFX3_n01_11658in_flag.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11910666
Sequences flagged as poor quality0
Sequence length151
%GC37

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCGGGGGGGG148340.124543833233171TruSeq Adapter, Index 8 (97% over 42bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)