FastQCFastQC Report
Mon 30 Nov 2015
HCJFNBCXX_l02n01_nw3-mss.3510000003ef1e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCJFNBCXX_l02n01_nw3-mss.3510000003ef1e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10033
Sequences flagged as poor quality0
Sequence length251
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAACCTA100.001467327244.280015
AGGGTAG150.004937281162.853355
TTAACCT150.004937281162.853354
AACACTT150.00918724948.85600375-79
CCCCCCC306.927339E-540.713333120-124
Produced by FastQC (version 0.11.2)