FastQCFastQC Report
Mon 30 Nov 2015
HCJFNBCXX_l02n01_40255-mss.3510000003ef6e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCJFNBCXX_l02n01_40255-mss.3510000003ef6e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2876
Sequences flagged as poor quality0
Sequence length251
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTTTTT403.6251266E-430.537281125-129
AAAAAAA1708.301223E-411.496388220-224
Produced by FastQC (version 0.11.2)