FastQCFastQC Report
Mon 30 Nov 2015
HCJFNBCXX_l01n02_34012-1-mss.3520000003f074.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCJFNBCXX_l01n02_34012-1-mss.3520000003f074.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1668
Sequences flagged as poor quality0
Sequence length251
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATATCA100.002747251193.030293
TATACAA100.0071249153141.55556200-204
TTTTTTT500.005063568219.30302835-39
Produced by FastQC (version 0.11.2)