FastQCFastQC Report
Mon 30 Nov 2015
HCJFNBCXX_l01n02_30484-1-mss.3520000003f05b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCJFNBCXX_l01n02_30484-1-mss.3520000003f05b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6588
Sequences flagged as poor quality0
Sequence length251
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATATA256.4705126E-42516.0220-224
GAACCAA256.4705126E-42516.0220-224
CCTGCAG100.00299032192.061083
CTGGCTA100.00299032192.061082
TCGACAA100.0065546427148.0205-209
CAATTAC100.0065546427148.0205-209
Produced by FastQC (version 0.11.2)