FastQCFastQC Report
Wed 8 May 2019
HCH2WBGXB_n01_VvMYB_A6_Vv_h.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCH2WBGXB_n01_VvMYB_A6_Vv_h.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56070374
Sequences flagged as poor quality0
Sequence length76
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACCACC491650.025.4960121
AACCCCC278050.024.4106251
CATCGCG125900.022.88160341
CATCGGG425950.022.2126241
CGCATCG588050.022.13672839
GCATCGG451300.021.7011340
ATCGCGT49950.021.65384142
GCGCATC730900.021.6127738
GCGGCGT38150.021.46751652
GCGGGGT139000.021.07517252
ATCGGGG325150.020.84171942
CGGCGTG42050.020.64175253
ATCGCGG88150.020.45016942
TGGCGGG131750.020.40157750
GCATCGC154050.020.19947240
AACTACC293900.020.0808451
TGCGCAT841900.020.07663237
TTGCGGG92100.020.02645550
CGGGGTG156900.019.7861653
TGCGGGG85350.019.10904551
Produced by FastQC (version 0.11.5)