FastQCFastQC Report
Wed 8 May 2019
HCH2WBGXB_n01_C24CAMTA1_F1b_B_g-2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCH2WBGXB_n01_C24CAMTA1_F1b_B_g-2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444354
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGGCCC252.3900809E-455.99694415
CCGACGT200.00694765552.50303648
GCGCACC200.00695074852.49712813
GAGTTCG806.2394975E-834.9980856
CCGCCGC400.002418490634.99808518
ATCGGGG450.004302055631.11641542
TATGCCG703.4846984E-530.00173648
GTATGCC703.4846984E-530.00173647
GCGGGGT604.9810257E-429.16507152
ACGTAGA604.9810257E-429.16507149
GTTCGGA1004.41647E-727.9984728
TGCCGGG500.00720760727.99847250
TACGTAG657.948924E-426.92463548
AGTTCGG1056.764167E-726.665217
GTGGGGG1001.3968443E-524.49866357
GCTGCAG952.7787153E-422.1040557
CGGGGTG800.002665443821.87380453
AAACCCG800.002665443821.87380459
CATTCAG6900.021.30797833
GGCGGGG1003.9298442E-420.99885451
Produced by FastQC (version 0.11.5)