[2024-06-08 06:40:08,368] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-06-08 06:40:08,368] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-06-08 06:40:08,369] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-06-08 06:40:08,371] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-06-08 06:40:08,371] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-06-08 06:40:08,371] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-06-08 06:40:08,405] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-06-08 06:40:08,405] multiqc [INFO ] This is MultiQC v1.9 [2024-06-08 06:40:08,405] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-06-08 06:40:08,405] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/d3/49ca26782c053eb50fc982f7496a94/merged [2024-06-08 06:40:08,405] multiqc [INFO ] Template : default [2024-06-08 06:40:08,405] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-06-08 06:40:08,405] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/d3/49ca26782c053eb50fc982f7496a94/merged [2024-06-08 06:40:08,406] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-06-08 06:40:08,406] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-47340846/tmp97bi6uav [2024-06-08 06:40:08,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_10_fastqc.html [2024-06-08 06:40:08,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_10_fastqc.html [2024-06-08 06:40:08,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_11_fastqc.html [2024-06-08 06:40:08,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_11_fastqc.html [2024-06-08 06:40:08,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_12_fastqc.html [2024-06-08 06:40:08,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_12_fastqc.html [2024-06-08 06:40:08,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_13_fastqc.html [2024-06-08 06:40:08,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_13_fastqc.html [2024-06-08 06:40:09,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_14_fastqc.html [2024-06-08 06:40:09,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_14_fastqc.html [2024-06-08 06:40:09,143] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_15_fastqc.html [2024-06-08 06:40:09,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_15_fastqc.html [2024-06-08 06:40:09,220] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_16_fastqc.html [2024-06-08 06:40:09,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_16_fastqc.html [2024-06-08 06:40:09,427] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_17_fastqc.html [2024-06-08 06:40:09,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_17_fastqc.html [2024-06-08 06:40:09,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_18_fastqc.html [2024-06-08 06:40:09,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_18_fastqc.html [2024-06-08 06:40:09,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_19_fastqc.html [2024-06-08 06:40:09,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_19_fastqc.html [2024-06-08 06:40:09,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_1_fastqc.html [2024-06-08 06:40:09,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_1_fastqc.html [2024-06-08 06:40:10,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_20_fastqc.html [2024-06-08 06:40:10,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_20_fastqc.html [2024-06-08 06:40:10,200] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_21_fastqc.html [2024-06-08 06:40:10,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_21_fastqc.html [2024-06-08 06:40:10,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_22_fastqc.html [2024-06-08 06:40:10,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_22_fastqc.html [2024-06-08 06:40:10,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_23_fastqc.html [2024-06-08 06:40:10,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_23_fastqc.html [2024-06-08 06:40:10,429] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_24_fastqc.html [2024-06-08 06:40:10,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_24_fastqc.html [2024-06-08 06:40:10,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_2_fastqc.html [2024-06-08 06:40:10,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_2_fastqc.html [2024-06-08 06:40:10,577] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_3_fastqc.html [2024-06-08 06:40:10,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_3_fastqc.html [2024-06-08 06:40:10,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_4_fastqc.html [2024-06-08 06:40:10,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_4_fastqc.html [2024-06-08 06:40:10,726] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_5_fastqc.html [2024-06-08 06:40:10,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_5_fastqc.html [2024-06-08 06:40:10,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_6_fastqc.html [2024-06-08 06:40:10,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_6_fastqc.html [2024-06-08 06:40:10,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_7_fastqc.html [2024-06-08 06:40:10,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_7_fastqc.html [2024-06-08 06:40:10,956] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_8_fastqc.html [2024-06-08 06:40:10,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_8_fastqc.html [2024-06-08 06:40:11,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_9_fastqc.html [2024-06-08 06:40:11,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_ath_9_fastqc.html [2024-06-08 06:40:11,105] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HCGKFDRX5_n01_undetermined_fastqc.html [2024-06-08 06:40:11,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HCGKFDRX5_n01_undetermined_fastqc.html [2024-06-08 06:40:11,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-06-08 06:40:11,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-06-08 06:40:11,194] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-06-08 06:40:11,194] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-06-08 06:40:11,194] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-06-08 06:40:11,194] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-06-08 06:40:11,194] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-06-08 06:40:12,043] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-06-08 06:40:12,043] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-06-08 06:40:12,062] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 25 samples (table) [2024-06-08 06:40:12,063] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-06-08 06:40:12,073] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-06-08 06:40:12,077] multiqc [DEBUG ] No samples found: conpair [2024-06-08 06:40:12,083] multiqc [DEBUG ] No samples found: peddy [2024-06-08 06:40:12,088] multiqc [DEBUG ] No samples found: somalier [2024-06-08 06:40:12,092] multiqc [DEBUG ] No samples found: methylQA [2024-06-08 06:40:12,100] multiqc [DEBUG ] No samples found: mosdepth [2024-06-08 06:40:12,104] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-06-08 06:40:12,107] multiqc [DEBUG ] No samples found: qualimap [2024-06-08 06:40:12,111] multiqc [DEBUG ] No samples found: preseq [2024-06-08 06:40:12,115] multiqc [DEBUG ] No samples found: quast [2024-06-08 06:40:12,119] multiqc [DEBUG ] No samples found: qorts [2024-06-08 06:40:12,123] multiqc [DEBUG ] No samples found: rna_seqc [2024-06-08 06:40:12,126] multiqc [DEBUG ] No samples found: rockhopper [2024-06-08 06:40:12,131] multiqc [DEBUG ] No samples found: rsem [2024-06-08 06:40:12,140] multiqc [DEBUG ] No samples found: rseqc [2024-06-08 06:40:12,144] multiqc [DEBUG ] No samples found: busco [2024-06-08 06:40:12,148] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-06-08 06:40:12,153] multiqc [DEBUG ] No samples found: disambiguate [2024-06-08 06:40:12,157] multiqc [DEBUG ] No samples found: supernova [2024-06-08 06:40:12,166] multiqc [DEBUG ] No samples found: deeptools [2024-06-08 06:40:12,169] multiqc [DEBUG ] No samples found: sargasso [2024-06-08 06:40:12,174] multiqc [DEBUG ] No samples found: verifybamid [2024-06-08 06:40:12,177] multiqc [DEBUG ] No samples found: mirtrace [2024-06-08 06:40:12,181] multiqc [DEBUG ] No samples found: happy [2024-06-08 06:40:12,184] multiqc [DEBUG ] No samples found: mirtop [2024-06-08 06:40:12,189] multiqc [DEBUG ] No samples found: homer [2024-06-08 06:40:12,193] multiqc [DEBUG ] No samples found: macs2 [2024-06-08 06:40:12,196] multiqc [DEBUG ] No samples found: theta2 [2024-06-08 06:40:12,201] multiqc [DEBUG ] No samples found: snpeff [2024-06-08 06:40:12,206] multiqc [DEBUG ] No samples found: gatk [2024-06-08 06:40:12,210] multiqc [DEBUG ] No samples found: htseq [2024-06-08 06:40:12,215] multiqc [DEBUG ] No samples found: bcftools [2024-06-08 06:40:12,219] multiqc [DEBUG ] No samples found: featureCounts [2024-06-08 06:40:12,224] multiqc [DEBUG ] No samples found: fgbio [2024-06-08 06:40:12,235] multiqc [DEBUG ] No samples found: dragen [2024-06-08 06:40:12,238] multiqc [DEBUG ] No samples found: dedup [2024-06-08 06:40:12,241] multiqc [DEBUG ] No samples found: damageprofiler [2024-06-08 06:40:12,260] multiqc [DEBUG ] No samples found: biobambam2 [2024-06-08 06:40:12,264] multiqc [DEBUG ] No samples found: mtnucratio [2024-06-08 06:40:12,266] multiqc [DEBUG ] No samples found: picard [2024-06-08 06:40:12,271] multiqc [DEBUG ] No samples found: prokka [2024-06-08 06:40:12,274] multiqc [DEBUG ] No samples found: samblaster [2024-06-08 06:40:12,284] multiqc [DEBUG ] No samples found: samtools [2024-06-08 06:40:12,289] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-06-08 06:40:12,294] multiqc [DEBUG ] No samples found: bamtools [2024-06-08 06:40:12,297] multiqc [DEBUG ] No samples found: jellyfish [2024-06-08 06:40:12,303] multiqc [DEBUG ] No samples found: vcftools [2024-06-08 06:40:12,308] multiqc [DEBUG ] No samples found: longranger [2024-06-08 06:40:12,313] multiqc [DEBUG ] No samples found: stacks [2024-06-08 06:40:12,317] multiqc [DEBUG ] No samples found: varscan2 [2024-06-08 06:40:12,328] multiqc [DEBUG ] No samples found: bbmap [2024-06-08 06:40:12,331] multiqc [DEBUG ] No samples found: bismark [2024-06-08 06:40:12,335] multiqc [DEBUG ] No samples found: biscuit [2024-06-08 06:40:12,339] multiqc [DEBUG ] No samples found: hicexplorer [2024-06-08 06:40:12,342] multiqc [DEBUG ] No samples found: hicup [2024-06-08 06:40:12,347] multiqc [DEBUG ] No samples found: hicpro [2024-06-08 06:40:12,350] multiqc [DEBUG ] No samples found: salmon [2024-06-08 06:40:12,354] multiqc [DEBUG ] No samples found: kallisto [2024-06-08 06:40:12,358] multiqc [DEBUG ] No samples found: slamdunk [2024-06-08 06:40:12,363] multiqc [DEBUG ] No samples found: star [2024-06-08 06:40:12,366] multiqc [DEBUG ] No samples found: hisat2 [2024-06-08 06:40:12,370] multiqc [DEBUG ] No samples found: tophat [2024-06-08 06:40:12,373] multiqc [DEBUG ] No samples found: bowtie2 [2024-06-08 06:40:12,377] multiqc [DEBUG ] No samples found: bowtie1 [2024-06-08 06:40:12,381] multiqc [DEBUG ] No samples found: snpsplit [2024-06-08 06:40:12,385] multiqc [DEBUG ] No samples found: kat [2024-06-08 06:40:12,389] multiqc [DEBUG ] No samples found: leehom [2024-06-08 06:40:12,392] multiqc [DEBUG ] No samples found: adapterRemoval [2024-06-08 06:40:12,396] multiqc [DEBUG ] No samples found: clipandmerge [2024-06-08 06:40:12,401] multiqc [DEBUG ] No samples found: cutadapt [2024-06-08 06:40:12,404] multiqc [DEBUG ] No samples found: flexbar [2024-06-08 06:40:12,409] multiqc [DEBUG ] No samples found: kaiju [2024-06-08 06:40:12,413] multiqc [DEBUG ] No samples found: kraken [2024-06-08 06:40:12,418] multiqc [DEBUG ] No samples found: malt [2024-06-08 06:40:12,424] multiqc [DEBUG ] No samples found: trimmomatic [2024-06-08 06:40:12,428] multiqc [DEBUG ] No samples found: sickle [2024-06-08 06:40:12,432] multiqc [DEBUG ] No samples found: skewer [2024-06-08 06:40:12,435] multiqc [DEBUG ] No samples found: sortmerna [2024-06-08 06:40:12,439] multiqc [DEBUG ] No samples found: biobloomtools [2024-06-08 06:40:12,443] multiqc [DEBUG ] No samples found: fastq_screen [2024-06-08 06:40:12,446] multiqc [DEBUG ] No samples found: afterqc [2024-06-08 06:40:12,451] multiqc [DEBUG ] No samples found: fastp [2024-06-08 06:40:13,289] multiqc.modules.fastqc.fastqc [INFO ] Found 25 reports [2024-06-08 06:40:13,657] multiqc [DEBUG ] No samples found: pycoqc [2024-06-08 06:40:13,661] multiqc [DEBUG ] No samples found: minionqc [2024-06-08 06:40:13,666] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-06-08 06:40:13,671] multiqc [DEBUG ] No samples found: clusterflow [2024-06-08 06:40:13,675] multiqc [DEBUG ] No samples found: bcl2fastq [2024-06-08 06:40:13,679] multiqc [DEBUG ] No samples found: interop [2024-06-08 06:40:13,683] multiqc [DEBUG ] No samples found: ivar [2024-06-08 06:40:13,688] multiqc [DEBUG ] No samples found: flash [2024-06-08 06:40:13,692] multiqc [DEBUG ] No samples found: seqyclean [2024-06-08 06:40:13,692] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-06-08 06:40:13,692] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-06-08 06:40:13,692] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-06-08 06:40:13,692] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-06-08 06:40:13,692] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-06-08 06:40:13,692] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-06-08 06:40:13,693] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-06-08 06:40:13,723] multiqc [INFO ] Compressing plot data [2024-06-08 06:40:14,193] multiqc [INFO ] Report : multiqc_report.html [2024-06-08 06:40:14,194] multiqc [INFO ] Data : multiqc_data [2024-06-08 06:40:14,194] multiqc [DEBUG ] Moving data file from '/state/partition1/job-47340846/tmp97bi6uav/multiqc_data' to '/vast/gencore/GENEFLOW/work/d3/49ca26782c053eb50fc982f7496a94/merged/multiqc_data' [2024-06-08 06:40:14,620] multiqc [INFO ] MultiQC complete