FastQCFastQC Report
Fri 6 Mar 2020
HCCYVBGXF_n02_B.F1.mhWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCYVBGXF_n02_B.F1.mhWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32272138
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG97650.08.13961170
CTCGGTG507600.07.68446570
GTAGATA104150.07.63161870
TCGGTGG478200.07.42469270
CGGTGGT395950.07.33101770
TAGATCT847550.07.15124770
ATCTCGG655150.07.150977670
GATCTCG747550.06.93689170
TCTCGGT612000.06.814129470
GGTGGTC372850.06.70523770
AGATCTC846850.06.284737670
GTGTAGA1191300.06.21346570
GTGGTCG330650.06.110226670
TGTAGAT1183850.05.918347470
CATTAAA183950.05.899533364
AGTGTAG1310400.05.83031769
AAGGGGG121100.05.811566469
TGGTCGC269050.05.648157670
CGCCGTA176750.05.643942456
GTAGATC1227100.05.5783869
Produced by FastQC (version 0.11.5)