FastQCFastQC Report
Fri 6 Mar 2020
HCCYVBGXF_n02_B.F1.ffWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCYVBGXF_n02_B.F1.ffWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39836685
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG159050.011.183001570
AAGGGGG166100.09.27472569
TAGGGGG58350.07.980184638
GTAGATA136150.07.766362770
AAAGGGG201650.07.674184368
CTCGGTG778600.07.24901570
TCGGTGG743800.07.06095570
ATCTCGG966400.06.62289170
TCTCGGT907100.06.55792770
CGGTGGT673200.06.28797170
TAGATCT1251350.06.264748670
GGTGGTC603900.06.163062670
AGATCTC1219200.06.14564170
GATCTCG1127700.06.13510170
CATTAAA338150.06.11809864
GTATCAT320050.05.99339960
GCCGTAT330750.05.96866557
CGTATCA332000.05.8197859
GTGTAGA1720650.05.78512470
TGTAGAT1680300.05.77818570
Produced by FastQC (version 0.11.5)