FastQCFastQC Report
Fri 6 Mar 2020
HCCYVBGXF_n02_B.F1.fdWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCYVBGXF_n02_B.F1.fdWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43900450
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG196700.010.80500370
AAGGGGG204500.08.71473469
CTCGGTG597300.07.732017570
TAGATCT999850.07.518613370
TCGGTGG569000.07.476607370
TAGGGGG69400.07.415796838
CGGTGGT461750.07.325052370
AAAGGGG253750.07.13347768
ATCTCGG777250.06.91944170
GTAGATA133950.06.82241870
GATCTCG892600.06.688181470
TCTCGGT733900.06.65068670
GTGTAGA1407400.06.28180470
AGATCTC1007950.06.273635470
CGCCGTA216750.06.023503356
AGTGTAG1554300.06.003477670
GCCGTAT227250.05.99173457
TGTAGAT1398200.05.960026370
CATTAAA244900.05.846245364
GAGTGTA1680800.05.828706770
Produced by FastQC (version 0.11.5)