FastQCFastQC Report
Fri 6 Mar 2020
HCCYVBGXF_n02_A.F1.mfWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCYVBGXF_n02_A.F1.mfWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35978830
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG139950.09.7322170
AAGGGGG150400.07.659062469
CGCCGTA184400.07.17511956
GCCGTAT195000.06.92873557
CATTAAA210250.06.69309464
TAGATCT672200.06.323462570
TAGGGGG53650.06.2647438
TCGGTGG432700.06.25500170
GTAGATA104050.06.19170970
TCATTAA230800.06.157702463
CTCGGTG444050.06.11877770
CGTATCA225250.06.076003659
GTATCAT232200.05.99968160
AAAGGGG190200.05.872137568
TCTCGGT539950.05.836113570
ATCTCGG558950.05.77544669
CCGTATC245100.05.71246358
GTGTAGA934800.05.685656569
TGTAGAT933700.05.677449770
AGATCTC722650.05.65912970
Produced by FastQC (version 0.11.5)