FastQCFastQC Report
Fri 6 Mar 2020
HCCYVBGXF_n02_A.F1.meWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCYVBGXF_n02_A.F1.meWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38736984
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG165300.011.77675770
AAGGGGG168250.010.03017369
TAGGGGG55200.08.24519838
AAAGGGG221750.07.815280468
GCCGTAT245200.06.7664657
CATTAAA254900.06.674270664
TCGGTGG582150.06.627816770
CGCCGTA241450.06.61055556
CTCGGTG600400.06.58380670
TCATTAA271350.06.3598363
CGGTGGT481400.06.27665870
TAGATCT917800.06.1151870
CGTATCA276600.06.087015659
ATCTCGG752750.06.069927770
GTATCAT273150.06.061403360
GTAGATA113000.06.041989370
GGGGGTA62750.06.02438353
TCTCGGT716800.05.95916870
GGGGGTT117900.05.67045152
GATCTCG856450.05.6661170
Produced by FastQC (version 0.11.5)