FastQCFastQC Report
Fri 6 Mar 2020
HCCYVBGXF_n02_A.F1.fhWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCYVBGXF_n02_A.F1.fhWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31846640
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG128450.09.64934570
AAGGGGG141700.07.560827769
AAAGGGG179400.05.991182368
CGCCGTA130150.05.970394656
GCCGTAT134950.05.939697357
CTCGGTG295400.05.71301370
TAGATCT398650.05.427819770
TAGGGGG53750.05.27586438
GAGTGTA614850.05.24468270
CATTAAA163200.05.212276564
ATCTCGG359800.05.17701270
CGTATCA160500.05.125112559
GTGTAGA522800.05.09643969
TCGGTGG292650.05.084744570
Produced by FastQC (version 0.11.5)