FastQCFastQC Report
Fri 6 Mar 2020
HCCYVBGXF_n02_A.F1.fgWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCYVBGXF_n02_A.F1.fgWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32444478
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG129400.09.82242870
AAGGGGG140750.07.88593769
AAAGGGG175900.06.469030468
CTCGGTG350900.06.08685570
TAGGGGG51000.06.04106438
TAGATCT515000.05.94224770
ATCTCGG429950.05.85541270
GCCGTAT169400.05.806101357
CGCCGTA160450.05.802648556
GATCTCG491450.05.60714670
GTGTAGA703550.05.56905670
ATGGGGG94150.05.3925570
CGTATCA184650.05.36461959
AGATCTC550750.05.30222370
TGTAGAT709650.05.299154370
AGTGTAG763350.05.274928669
TCGGTGG340650.05.27297270
TCTCGGT418200.05.24122569
GTATCAT187050.05.239712760
CATTAAA198300.05.136912364
Produced by FastQC (version 0.11.5)