FastQCFastQC Report
Fri 6 Mar 2020
HCCYVBGXF_n02_A.F1.fdWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCYVBGXF_n02_A.F1.fdWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31798385
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG386980.1216980044741266No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGGGG79250.013.16502438
AAGGGGG221700.013.0291169
AGGGGGG272450.012.69710970
AAAGGGG254450.011.2829268
GGGTTAA54950.09.80959354
ATGGGGG126550.09.57301270
GGGGTTA71200.08.99629353
GGTTTAA51150.08.96439455
GGGGTAA68250.08.41083654
AAAAGGG371350.08.30586367
GGGGGTA94800.08.27050853
GGTTAAA66650.08.19254856
TTAGGGG57700.08.00941437
GGGGGTT185950.07.755185652
GTAGGGG62550.07.500324237
GGGTTTA63100.07.43315954
ATAGGGG63900.06.84913469
CGGGGGG169450.06.79388712
AATGGGG156050.06.775942369
GTTAAAA125900.06.755837457
Produced by FastQC (version 0.11.5)