FastQCFastQC Report
Fri 6 Mar 2020
HCCYVBGXF_n02_A.F1.fcWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCYVBGXF_n02_A.F1.fcWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34769333
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG117150.09.504642570
AAGGGGG123900.08.19535369
CTCGGTG511550.06.584729770
TCGGTGG501800.06.356801570
AAAGGGG165900.06.12027168
TAGATCT754700.06.087100570
ATCTCGG626000.05.8898670
GATCTCG697500.05.79312170
TCTCGGT585350.05.778331869
TAGGGGG43950.05.735584738
GTATCAT220150.05.72405961
GTAGATA111100.05.704472570
AGATCTC759000.05.63280770
GCCGTAT235450.05.58984158
GTGTAGA1036450.05.57425170
CGGTGGT485000.05.55904270
GGTGGTC415350.05.445894770
TGTAGAT1027000.05.42767269
CGTATCA234950.05.378340260
AGTGTAG1132600.05.246337470
Produced by FastQC (version 0.11.5)