FastQCFastQC Report
Thu 11 Jun 2020
HCCY2BGXF_n01_ph-bZIP9..ps-bZIP1_Col..h-B_p1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCY2BGXF_n01_ph-bZIP9..ps-bZIP1_Col..h-B_p1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4104353
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGG28600.028.51382642
CGGGGGT12400.025.40308444
TCGGGGG24500.024.9998640
AATCGGG35300.024.192541
GAATCGG38100.023.05761540
TCCGGAG52050.021.9883534
ACTCCGG51800.021.95933732
CACTCCG53450.021.47789831
CTCCGGA53350.021.38694833
TCGGGGT8900.020.44932443
CCGGAGA55600.020.3955735
AGAATCG46100.020.11919439
CGGGGGG17850.019.9998941
CGGAGAA56350.019.56510736
TCACTCC61900.018.88519530
GTCACTC61800.018.57594729
GGAGAAT59650.017.5439137
CAGTCAC66150.017.4073127
AGTCACT67350.017.09715828
CCAGTCA68200.017.03802926
Produced by FastQC (version 0.11.5)